SE3830535

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8853
  • Solanum tuberosum
  • SE3830535
  • hAT
  • Hat7
  • chr04:51438267-51438944
  • TGTAAGTT
  • CAGGGGCGGCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TGTAAGTT     G      A   TAATTTGTGGCCTAAAGCGAAATTTTTATTAGAGGCCTAAAATCTATATAAATTTTATCTATATCTATTTATTTTTCTAAATTTCTAGATGTAAATTACTACTTAATATCTTTTATATAAATGATTTTTCAAACACTTTTTTTTAATTATTAGTTTTAAGTAAGATTTTATCAATTCAACATTGAAAAACATCCTTTTATTGAGACAATTATTATATGAATTATTAACACAATTTTATAAGTAATAAGTTGATAAACTTTAAAGATAAGAGTTAGAATCATAGAATCTGATTCAAAAAGTTGATAACTTGGTATA
        CAGGG CGGCTC ACA                                                                                                                                                                                                                                                                                                                           
        ||||| |||||| |||                                                                                                                                                                                                                                                                                                                            
        GTCCC GCCGAG ACG                                                                                                                                                                                                                                                                                                                           
TTGAATGT     G      A   GATATTATAAAATCCGTAACCGGAATCCGGGGGTTAAAAACCCCCGGAGTTAAAAAATATTTATTTTTTAATACAAAGAATTGGGATAAGTTTATCTTCTTTAATTCTTTTGTAATAAAACCTAAGAATGTAAAAGAAGCAATTGTGAGTGTAATAAATAAGAAACATTGAGAAAAACGTGAGATAAAGAAGTTTAGAAACTATCAATCTCATTATGTGAGAGTTTTTATACTTAGTTATCAGCTTTTCACAACTTGTTTCACGTAATGTTTAAGAAAAAAAATTAAATAAACAATTAAAAGTATAATTTCATCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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