Plant MITE

SE3820536

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8854
Solanum tuberosum
SE3820536
Mutator
M8
chr12:63988626-63988966
TTCATTGAC
TCATTGACCGGCATAATACATAAATATGCCTTTTAACTTGACCTCATTTCACATTTATACTCTCCAACTTTGGGTGTGCATAAATAGACGCTTAAACTTGTATAAAGTTGAACAAGTAAACACATAAGTCCTAAGTGGCATAATACA

Secondary structure and sequence

TSD TIR

5'

3'

 T   T   CC              A               GAC       CAC      --A   ------------                     A                                  A       A      A       AA    CATAG    --CCA   A
  TCA TGA  GGCATAATACATAA TATGCCTTTTAACTT   CTCATTT   ATTTAT   CTC            TCCAACTTTGGGTGTGCATAA TAGACGCTTAAACTTGTATAAAGTTGAACAAGTA ACACATA GTCCTA GTGGCAT  TACA     GACA     CGT 
  ||| |||  |||||||||||||| |||||||||||||||   |||||||   ||||||   |||            ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||  ||||     ||||     ||| G
  AGT ACT  CCGTATTATGTATT ATACGGGAAATTGAA   GAGTAAA   TAAATA   GAG            AGGTTGAAACTCACACGTGTT ATCTGTGAATTTGAACATATTTTAACTTGTTTAT TGTGTGT CGGGAT CACCGTA  ATGT     CTGT     GCA 
CC   T   -T              A               GCA       ATA      CAG   GTTGAAACTCAC                     C                                  C       G      A       GG    ----A    TAAAC   G

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820536

TTCATTGACCGGCATAATACATAAATATGCCTTTTAACTTGACCTCATTTCACATTTATACTCTCCAACTTTGGGTGTGCATAAATAGACGCTTAAACTTGTATAAAGTTGAACAAGTAAACACATAAGTCCTAAGTGGCATAATACACATAGGACACCACGTAGGACGCAAATTGTCATGTAGGATGCCACATAGGGCGTGTGTGTCTATTTGTTCAATTTTATACAAGTTTAAGTGTCTACTTGTGCACACTCAAAGTTGGACACTCAAAGTTGGAGGACATAAATATAAAATGAGACGAAGTTAAAGGGCATAATTATGTATTATGCCTTCATTGACC

Copy Cancel