SE3810539

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8857
  • Solanum tuberosum
  • SE3810539
  • Tc1/Mariner
  • St1
  • chr07:39916646-39916924
  • TA
  • TACTCCCGCTGTCCCTATTTATTTTTCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
     C      C           T    --------------  -    T  AATTTGATGTTCCTTTTTACTTGTTATTTTTGACAAATCAAGGAAGAAAAAAATTATTTTTCCTATTATACCCTCAATTTATTAACATTGAATT
TACTC CGCTGT CCTATTTATTT TCAA              AT ATTT TT                                                                                              
||||| |||||| ||||||||||| ||||              || |||| ||                                                                                              A
ATGAG GTGGCA GGATAAATGAA AGTT              GT AATA AT                                                                                              
     A      A           C    TAAAACTAACCTGT  G    -  TCTTTTATTATTAACTATATCATTCAAATGGTAAAATGTAAATAATTAACTATACCAGAGTTTGTATAAATGAGTAATGTAAAAAGTTTTTGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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