SE3810540

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8858
  • Solanum tuberosum
  • SE3810540
  • Tc1/Mariner
  • St6
  • chr03:18355387-18355648
  • TA
  • TACTC

Secondary structure and sequence

TSD    TIR
5'



3'
     CCTCC   C         A           GA        T       A  C  TT      GTA      --T   -AT      TA   A       -TTGTCAA    -----     C    A   CT
TACTC     GTC CAATTTATG GACACATTTTG  TTTTGAGA TCAAATA GT TA  TTTGAC   AAATTT   CAT   ATCTTT  AAT TTTTGGA        TTAT     TGTGA TTAT GTA  
|||||     ||| ||||||||| |||||||||||  |||||||| ||||||| || ||  ||||||   ||||||   |||   ||||||  ||| |||||||        ||||     ||||| |||| |||  T
ATGAG     CAG GTTAAATAC CTGTGTAAAGT  AAAGCTCT AGTTTGT CA AT  AAACTG   TTTAAA   GTA   TAGAAG  TTA AAAATTT        AATA     ACATT GATA CAT  
     AAAAA   A         A           AA        C       -  A  TC      GTC      CGC   CTT      --   A       TTATTTTA    TATAT     T    -   TT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End