SE3830541

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8859
  • Solanum tuberosum
  • SE3830541
  • hAT
  • Hat62
  • chr10:31954304-31954508
  • TTTATAAG
  • TTATAAGCAGTGGCGGATCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
T                     CCTTGTGC   --            ----   CCCACTGCCTTTTGTGAAAAACAGTAATATTTATGTATAAAAAATTAGTAT
 TTATAAGCAGTGGCGGATCTA        ATA  ATGGGTGCTTAA    GCA                                                   
 |||||||||||||||||||||        |||  ||||||||||||    |||                                                   T
 AATATTTGTCACCGCCTAGGT        TAT  TACCCACGAGTT    AAA                                                   
G                     CTTTAAAA   AA            GCAA   TAGAGTTTTTAATGATGAATTTTACCCACGAGTTAATTATGTAAAGTTACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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