SE3810545

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8863
  • Solanum tuberosum
  • SE3810545
  • Tc1/Mariner
  • St12
  • chr10:5139808-5140093
  • TA
  • TACTCCCTCCGTCCCTATTTACTTGTCCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
                     C        ATTTCCTCT      ------TGTCCCTATTTAC     - A      CAAATCAAGAAAGGACAAAAAAAATTCCTATTATACCCTCATTTAAACTTCTTGAAAATTTAAACTTCCCCCA
TACTCCCTCCGTCCCTATTTA TTGTCCAT         TTTAGA                   TTGTC C TTTTGA                                                                         
||||||||||||||||||||| ||||||||         ||||||                   ||||| | ||||||                                                                         A
ATGAGGGAGGCAGGGATAAAT AACAGGTG         AAATCT                   GTTGT A CTAATC                                                                         
                     C        ---------      TTACTGTGTGTATAATTCC     T -      GTATCATTTCAATGTTAAAACGGGAATAATTAATACTAAGGTTTTATTTAAATAAGTTCTATTGATTAGTTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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