Plant MITE

SE3820548

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8866
Solanum tuberosum
SE3820548
Mutator
M3
chr04:56003152-56003514
TTCTTTTAA
AAGGGAAAAAGGACAAATATACCCCCGAACTATCGTAAATGATATGCAGATACCCTCCGTCATACTTTTGGGACATTGGTGCCCCTGCCATCTAAAAACTAGAGCATATATACCATTTATACTAACGGATATACACGTGTCATAATCTTATCCACAGATCCGACATTTATTAAATATCGGATCGACGAATAAGATTGTGCCACGTGT

Secondary structure and sequence

TSD TIR

5'

3'

TTCTTTT                  A   C                  A    C                 C                      C A                     A  A     A        ----------TAT       T           C ACA       C    A
       AAGGGAAAAAGGACAAAT TAC CCCGAACTATCGTAAATG TATG AGATACCCTCCGTCATA TTTTGGGACATTGGTGCCCCTG C TCTAAAAACTAGAGCATATAT CC TTTAT CTAACGGA             ACACGTG CATAATCTTAT C   GATCCGA ATTT 
       |||||||||||||||||| ||| |||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||| || ||||| ||||||||             ||||||| ||||||||||| |   ||||||| |||| T
       TTCCCTTTTTCCTGTTTA ATG GGGCTTGATAGCATTTAT ATAC TCTATGGGAGGCAGTAT AAAACCCTGTAACTACGGGGAC G AGGTTTTTGATCTCGTATATA GG AAGTG GATTGCCT             TGTGCAC GTGTTAGAATA G   CTAGGCT TAAA 
AATTTTC                  C   A                  C    A                 A                      A C                     C  G     A        TCTGATTTATCCC       C           A CAG       A    T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820548

TTCTTTTAAGGGAAAAAGGACAAATATACCCCCGAACTATCGTAAATGATATGCAGATACCCTCCGTCATACTTTTGGGACATTGGTGCCCCTGCCATCTAAAAACTAGAGCATATATACCATTTATACTAACGGATATACACGTGTCATAATCTTATCCACAGATCCGACATTTATTAAATATCGGATCGACGAATAAGATTGTGCCACGTGTCCCTATTTAGTCTTCCGTTAGAGTGAAGGGCATATATGCTCTAGTTTTTGGACGACAGGGGCATCAATGTCCCAAAAATATGACGGAGGGTATCTACATACTATTTACGATAGTTCGGGAGTACATTTGTCCTTTTTCCCTTCTTTTAA

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