SE3830549

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8867
  • Solanum tuberosum
  • SE3830549
  • hAT
  • Hat2
  • chr01:70573447-70573859
  • CTCACCAA
  • CAGAGGCGTTTCCAGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTCACCAA         T       -------   -  T  C     ---------  ACGTGAACCCATGCTCCTCTCCTGAAATCGTATATAGTAGTGTTATATTTTTTAAAAATATTTAAATTTAGATATGTGAACCCACACTTGAAGTATTATACCGTGCGATAATGTTGGGTGCACCTCTCTAAGTGAGGTTAGAAATTTGAATCTTTTAG
        CAGAGGCGT TCCAGGA       GGG GG CA TGGGT         TC                                                                                                                                                              
        ||||||||| |||||||       ||| || || |||||         ||                                                                                                                                                               
        GTCTCCGCA AGGTCCT       TAC AC CC ACGTG         TT                                                                                                                                                              
AACCACTC         T       AAAACTC   T  -  -     ATAATGTTT  CCACCTAGATTCTATATTTAAACTAACTAAATTGTAAATCCAAGAATAGTGATTTTTATTAATTTTAAAATTTTAATATCCAGGTTTCAATAAAAATGGATAGGTTTGGTGAATCTCTCTGTAATGGGTTAAAATTTTTCCATTTATTTTGTTCTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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