SE3830550

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8868
  • Solanum tuberosum
  • SE3830550
  • hAT
  • Hat18
  • chr06:1017732-1018343
  • CAAATCGT
  • TAGGGATGGCAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAATCGT              -----------AG  GGTGTAGGGTGGGGGCGGTGCGGGTTGAGCTTAACCCGCAAAAATTTTAATCCTCCCCGCCCCACCCCGCATAGCAACTCTTTTCACTTTCAACCCGCCCCACCCTGCCCCGCATAGACCCATCCCGCATTAACCCGCCCCGCATAATTTTTTTAATATTTTTTTTCTAGTTATGTTTGATACTAAAAATAAAATTCATAAAAATAAATTCATTTTTTCATTAAGTTGGATTGATTTAATAGGATAGTGACTTAAAGTTTTATTTTTTAAAGGT
        TAGGGATGGCAATG             GC                                                                                                                                                                                                                                                                                  
        ||||||||||||||             ||                                                                                                                                                                                                                                                                                  C
        ATCCCTACCGTTAC             CG                                                                                                                                                                                                                                                                                  
TGCTAAAC              CCCACCCCTCCTA  CCCCGCTCCACCCAAATTCCGATACACCCCGCCCCACCCAAATTCCAACACACCCCGCCCAGCCTACTTCACCCAAAAAAAATTTAATTACACCCCGCCCCTCCCATATACACTAAAATACACCCAAGTTTGAATTAAAATTGAAAAATGTACAATGTTCTCACTATCTCGTAATAAATAATTCTATTAAAGTAATTCCTATGATTTTATAAGTTCTATTATTTACTTTTACCAAGTTATTTTTTATTATGTTAAAGAATGTACAAAGGATGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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