Plant MITE

SE3820552

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8870
Solanum tuberosum
SE3820552
Mutator
M11
PGSC0003DMB000000807:50915-51236
TTTATTTAA
AAGGGATAAGGCATAAGTACCCCTAGACTATGACCGAAATTTTAGAGACATACCTTAACTAAACTAAGGTCCTATTACCCTCTTGAACTCATTTTTTATATAATTGTGTACACCTTTTGGCTTATGTGGCACAC

Secondary structure and sequence

TSD TIR

5'

3'

TTTATTT      T    C       C CC        G  C                 C                 C   T    -    T    T        ATA     G            -             CA TCTGTGAC       A  TC
       AAGGGA AAGG ATAAGTA C  TAGACTAT AC GAAATTTTAGAGACATA CTTAACTAAACTAAGGT CTA TACC CTCT GAAC CATTTTTT   TAATT TGTACACCTTTT GGCTTATGTGGCA  C        TCCACGC GT  
       |||||| |||| ||||||| |  |||||||| || ||||||||||||||||| ||||||||||||||||| ||| |||| |||| |||| ||||||||   ||||| |||||||||||| |||||||||||||  |        ||||||| ||   
       TTCCCT TTCC TGTTCAT G  ATCTGATA TG CTTTAAAGTCTCTGTGT GAATTGATTTGATTCCA GAT ATGG GAGA CTTG GTAAAAAA   ATTAA ACATGTGGAAAA CCGAATACACCGT  G        GGGTGCG CG  
AATTTAT      T    A       A AA        A  A                 A                 A   T    T    -    T        AAC     A            A             AG TTTATAAA       -  AA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820552

TTTATTTAAGGGATAAGGCATAAGTACCCCTAGACTATGACCGAAATTTTAGAGACATACCTTAACTAAACTAAGGTCCTATTACCCTCTTGAACTCATTTTTTATATAATTGTGTACACCTTTTGGCTTATGTGGCACACTCTGTGACTCCACGCAGTTCAAGCGCGTGGGAAATATTTGGATGCCACATAAGCCAAAAAGGTGTACAAAATTACAAAAAAAATGTGTTCAGAGTGGTATTAGAACCTTAGTTTAGTTAAGATGTGTCTCTGAAATTTCAGTAATAGTCTAAAGATACTTGTACCTTTTCCCTTTATTTAA

Copy Cancel