SE3830553

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8871
  • Solanum tuberosum
  • SE3830553
  • hAT
  • Hat22
  • chr07:39601834-39602347
  • AGATGATT
  • GATGATTCAGTGTTTTAAAAGGCG

Secondary structure and sequence

TSD    TIR
5'



3'
A   G  -          A       GGGC   A     GAC     AT   -  A  --     A A      C   GAGACACAGGGAGTAAATCTTATGGATCTACGGGGCGTAGTATCATGTATATTCAATTTTATAATTTTATTACTACAAAAAAAAAAAGAGTAAAACTTTCAATAATTTTACAAATAAATTTTATTAAATAACCTAAAATATATACAAAAATATTAGTATGATTTTTATTTGAGAAAGGAATTA
 GAT AT TCAGTGTTTT AAAGGCG    TTG GGCGA   GTTTT  GCA GT CT  GGGCG G CGTAAG CCC                                                                                                                                                                                       
 ||| || |||||||||| |||||||    ||| |||||   |||||  ||| || ||  ||||| | |||||| |||                                                                                                                                                                                       A
 TTA TA AGTCACAAAA TTTTTGC    AAC CCGCT   CAAGG  CGT CA GA  CCCGC C GCGTTT CAT                                                                                                                                                                                       
    G  G          G       AAAA   C     ---     CC   T  -  AC     C C      A   TCCGCATCTAGGTATCCCGCATTCAAGGTTCACATTTTTGCATTCAGGACCCCACATTTTTGCATATGAGACCCTCAAAAAAAAAAAAAAAAATTTGGAAAAAACGAGATTTAGTATAAAAATAACAACCACATTACTATTAAGAGTTTATCATTAACATTATGAAAAGAAGTAATAACCACT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End