SE3840554

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8872
  • Solanum tuberosum
  • SE3840554
  • CACTA
  • Ca2
  • chr12:43490265-43490407
  • AGG
  • CACTACAAGAAAAGTGTGAATTACATGGGGATTTTTCTGGGGATTAGTATAAAAATTTGCAGGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
AGG             G                                    A        C      AT
   CACTACAAGAAAA TGTGAATTACATGGGGATTTTTCTGGGGATTAGTAT AAAATTTG AGGAAA  
   ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||  A
   GTGATGTTCTTTT ACACTTAATGTACCCCTAAAAGGATCCCTAATCATA TTTTAAGC TCCTTT  
GGA             A                                    C        A      GA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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