SE3830559

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8877
  • Solanum tuberosum
  • SE3830559
  • hAT
  • Hat36
  • PGSC0003DMB000001071:6281-7037
  • TCCACATT
  • TAGATCTGTCAAAATGGGCTGGCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TCCACATT    T             -C      AACCCAAC   A    AC   -   G   ---- AGAGAGTTAAATGGATTAGGATGGGATGACCCTTTTAATTAAAGGGCCTATAAAATAGCAGTCCAACCCATCCCTAAGCGGGCCACGGGTTGCGATGGGTCGGCCCTTCACCCAAAAAATGAACAATATTGCTGTCTTAGAAAATGTATTTAAGAGTATCAAACTTTGATGTCTGATGAACACGACATCAATACATACACAAATTCATGTATGAATTACATATTTTAGTGAATACTTACAAAAATACATAATAGCCAAGATACAACATCGTAAGATTCATCCGAGCAAAAAATATTACATGATCAATTTTTTCATAAA
        TAGA CTGTCAAAATGGG  TGGCCC        TCA CCCA  CCT AAC GGC    T                                                                                                                                                                                                                                                                                                                              
        |||| |||||||||||||  ||||||        ||| ||||  ||| ||| |||    |                                                                                                                                                                                                                                                                                                                               
        ATCT GACAGTTTTACCC  ACTGGG        TTC AGCC  GGG TGG GTT    A                                                                                                                                                                                                                                                                                                                              
TTACACCT    C             AA      -----CAA   -    --   T   -   AGGA CTTAATTCATCCCAACACGGATTAAAAAAACCGGGTAAATGCTTACTCCGAAAAACCGGGTCGGAGTAAACCGGGAGATCGGAGCATCCGGGTTGAGCGCTCTGAATCTCCGGTCGAGTACCCGATATTATTTTTATAAATAATACTTATAAAATCATCACAAAAAAAAAATTTCTAAAACAGTTATTTATAAATTTTTTATATTTTAGTTACAGATTGAGGAAACATCTAGAAAATGTAAAATCCCGGTAGTATGGTGATTTTAGTTCGGATGAAAATAAAAATACGGATTAAAAAGTAAAGGGGAAACAACAGAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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