Plant MITE

SE3820561

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8879
Solanum tuberosum
SE3820561
Mutator
M3
chr03:28725340-28725691
TAATATAAA
AGGGAAAAAGGACAAATATACCCCCGAACTATCGTAAATGGTATGCAAATACCCTCCGTCCTACTTTTGGGACATTGGTTCCCCTGCCGTCCAAAAAACTAGAGCATATATACCCTTTATACTAACGGACATACACGTGTCATAATCTTATCC

Secondary structure and sequence

TSD TIR

5'

3'

TAATATAA    A                C C                       A            C                  T           CA                  A  C     A        ----------CAT       T A           ACCAATCCGA
        AGGG AAAAGGACAAATATAC C CGAACTATCGTAAATGGTATGCA ATACCCTCCGTC TACTTTTGGGACATTGGT CCCCTGCCGTC  AAAAACTAGAGCATATAT CC TTTAT CTAACGGA             ACACGTG C TAATCTTATCC          
        |||| |||||||||||||||| | ||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||  |||||||||||||||||| || ||||| ||||||||             ||||||| | |||||||||||          C
        TCCC TTTTCCTGTTTATATG G GCTTGATAGCATTTACCATACGT TATGGGAGGCAG ATGAAAACCCTGTAACCA GGGGACGGCAG  TTTTTGATCTCGTATATA GG AAGTG GATTGCCT             TGTGCAC G GTTAGAATAGG          
AAATATAA    C                A A                       C            T                  C           -A                  C  T     A        TCTGATTTATCCC       C C           CAGCTATTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820561

TAATATAAAGGGAAAAAGGACAAATATACCCCCGAACTATCGTAAATGGTATGCAAATACCCTCCGTCCTACTTTTGGGACATTGGTTCCCCTGCCGTCCAAAAAACTAGAGCATATATACCCTTTATACTAACGGACATACACGTGTCATAATCTTATCCACCAATCCGACATTTATCGACGGATAAGATTGCGCCACGTGTCCCTATTTAGTCTTCCGTTAGAGTGAATGGCATATATGCTCTAGTTTTTAGACGGCAGGGGCACCAATGTCCCAAAAGTATGACGGAGGGTATCTGCATACCATTTACGATAGTTCGAGAGTATATTTGTCCTTTTCCCCTAATATAAA

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