SE3850562

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8880
  • Solanum tuberosum
  • SE3850562
  • PIF/harbinger
  • To7
  • chr11:7805232-7805467
  • TAA
  • AGGGGTCGTTTGGTGTGAGGGATAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA              G  A       AAATAAATA         TAAAAAAAATATTCCAAGGATAAAATTTGGTGTCTTGTTTGGTTTCCAAGTTTGGGATAAGTTATCCCACCATTTAT
  AGGGGTCGTTTGGT TG GGGATAA         GTCCTGGGA                                                                             
  |||||||||||||| || |||||||         |||||||||                                                                              
  TCCCCAGCAAACCA AC CCTTGTT         TAGGTTCTA                                                                             
AA              -  -       ------CAA         ATTAATAGGACTCTAATCGATAGAACCCTATTCAATAGGGTGGTATATATACCCTATTGAATAGGGTAGTGATACCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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