SE3830565

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8883
  • Solanum tuberosum
  • SE3830565
  • hAT
  • Hat13
  • chr11:1756438-1756597
  • GATACAAC
  • CCAGTGGCGGAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
GATACAA    T        CAAGGT    AGTT             GTTAATGTACATATATTTATTTAATTTTCTAATACAAA
       CCAG GGCGGAGC      TAGG    TGGGGGTTCACAT                                      
       |||| ||||||||      ||||    |||||||||||||                                       
       GGTC CCGCCTCG      ATCC    ACCCCCAAGTACC                                      
CAACATA    T        ------    ----             CAAGCCTGCTTGGGTGATCGAAAAAGCATCTGGGATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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