SE3810568

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8886
  • Solanum tuberosum
  • SE3810568
  • Tc1/Mariner
  • St20
  • chr11:33774217-33774471
  • TA
  • TACTCCCTCCGTTCACTTTTACTTGTCAC

Secondary structure and sequence

TSD    TIR
5'



3' 
                             --TTATTCCT         --TT  A     ACT    -A TTTTGGATATCAAGAAAAGACTATTTATTTTCCCATGTTTTACTCTCATCATTAAATACTTA
TACTCCCTCCGTTCACTTTTACTTGTCAC          AAAATAGAT    TC TTTTT   TGTC  C                                                              
|||||||||||||||||||||||||||||          |||||||||    || |||||   ||||  |                                                               
ATGAGGGAGGCAAGTGAAAATGAACAGTG          CCGTGTAGG    TC TTTTA   TTAA  A                                                              
                             TGAAACTGAA         TAAT  -     ---    TA CTATATCCATAAAATGGTTTGATAGGGGATATTTTACTACGGAACTTTTTACTAAACTTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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