SE3820569

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8887
  • Solanum tuberosum
  • SE3820569
  • Mutator
  • M8
  • chr05:4636386-4636706
  • AAGTTAAAA
  • GGCATAATACATAAACATGACCCTTAACTTGGCTTCAGCGGACAATGATG

Secondary structure and sequence

TSD    TIR
5'



3' 
AAGTTAAAA                            T    T       A    G   CCCTCC       A         T        C                                CG               -----AA    TGTAGGATGTCAT
         GGCATAATACATAAACATGACCCTTAAC TGGC TCAGCGG CAAT ATG      AACTTTG GTGTGCACA GTAGGCAC TAAACTTGTATAAAATTGAACAAGTAGACACA  TGTCCTACATGACAT       TACA             
         |||||||||||||||||||||||||||| |||| ||||||| |||| |||      ||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||       ||||             G
         CCGTATTATGTATTTGTACTGGGAATTG ACTG AGTTGCC GTTG TAT      TTGAAAC CATATGTGT CATCTGTG ATTTGAACATATTTTAACTTGTTTATCTGTGT  GCAGGATGTACTGTG       CTGT             
AAAATTGAA                            C    C       C    A   -----T       C         T        A                                AA               GGATATA    TAAAACACAGGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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