Plant MITE

SE3810570

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8888
Solanum tuberosum
SE3810570
Tc1/Mariner
St5
PGSC0003DMB000000396:126127-126376
TA
TACTCCCTCCATTTAAAAAAAAAATGA

Secondary structure and sequence

TSD TIR

5'

3'

         -CA        AAA     CCTA    GAC       AG  TTTAAGAAAATAAAAAAGACTTTTCAATCTTGTGGTTCTAAATTAAATGTCAAATGTACCAAAATGTCCTTTAATCTTG
TACTCCCTC   TTTAAAAA   AATGA    GTTT   TTGACAT  AG                                                                               
|||||||||   ||||||||   |||||    ||||   |||||||  ||                                                                               T
ATGAGGGAG   AAGTTTTT   TTACT    CGAA   AGGAAAA  AT                                                                               
         ACA        --C     -CAA    ---       --  CAGACAAAGTTTTTCTTACTAGGGAAATGAAAAAACCGTTGTGAAATTAAAGTCGAAAGGTGTACCGTATAAATACCGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810570

TACTCCCTCCATTTAAAAAAAAAATGACCTAGTTTGACTTGACATAGAGTTTAAGAAAATAAAAAAGACTTTTCAATCTTGTGGTTCTAAATTAAATGTCAAATGTACCAAAATGTCCTTTAATCTTGTGGCCATAAATATGCCATGTGGAAAGCTGAAATTAAAGTGTTGCCAAAAAAGTAAAGGGATCATTCTTTTTGAAACAGACTAAAAAGGAAAGCAACTCATTCTTTTTGAAACAGAGGGAGTA

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