SE3830573

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8891
  • Solanum tuberosum
  • SE3830573
  • hAT
  • Hat3
  • chr08:24561331-24561518
  • GTTTTCAC
  • ACCAGTGGCGGAGCCACCTTGATGA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTTTC                ----CC       ----------A  CCCTTCGGCGGAAAATTATATGATTTATACATGGTTAAAATATTTTTTCGGTA
      ACCAGTGGCGGAGCCA      TTGATGA           CC                                                     
      ||||||||||||||||      |||||||           ||                                                      
      TGGTCACCGCCTCGGT      AATTATT           TA                                                     
CACTTT                CTTAAA       CCCCCAAATTT  GACTTTTTTATCTGTGTGCTTCATCAGCTTCCCCCAAGCTGTAGATGATATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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