SE3820575

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8893
  • Solanum tuberosum
  • SE3820575
  • Mutator
  • M11
  • chr08:26648142-26648470
  • AAATATATA
  • ATATATAGGGAAAAGGTAGAAGTACCTCCCTAGACTATGACCCAAATTCGAGAGTCACACCTTAACTAA

Secondary structure and sequence

TSD    TIR
5'



3'
AA      -A    A      G       T               C     CG    T              TTAA                  T      C       TTTTT      T             T      C       T -AAATATA      CGCCT
  ATATAT  GGGA AAGGTA AAGTACC CCCTAGACTATGACC AAATT  AGAG CACACCTTAACTAA    ACTAAGGTCCTATTACCC CCTGAA TCATTTT     TGTAAT TTGTACACCTTTT GGCTTA GTGGCAT C        TCCATG     
  ||||||  |||| |||||| ||||||| ||||||||||||||| |||||  |||| ||||||||||||||    |||||||||||||||||| |||||| |||||||     |||||| ||||||||||||| |||||| ||||||| |        ||||||     C
  TATATA  CCCT TTCCGT TTCATGG GGGATCTGATACTGG TTTAG  TCTC GTGTGGAATTGATT    TGATTCCAGGATAATGGG GGATTT AGTAAAA     ATATTA AACATGTGGAAAA CCGAAT CACCGTG G        AGGTAC     
 A      AA    C      G       -               C     AG    T              ----                  -      A       --TAT      T             -      A       T GGGCACTG      ATCAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End