Plant MITE

SE3820577

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8895
Solanum tuberosum
SE3820577
Mutator
M8
chr11:6026842-6027152
ATAAATTTG
GGCATAATACATAAATGTCCCTTTTAACTTGGCCTCATTTCACATTTAGACCCTTCAACTTTTGTGTGCACAAGTAGACACTTAAACTTGTATAAAGTTGAACAAGTAGACATATGAGTCCTATGTAGCATAATACACATAG

Secondary structure and sequence

TSD TIR

5'

3'

 ATAAATTT                  CC T                  CAC     GA            -T                    A  C                             A         A    AA    -CA   GACA
         GGCATAATACATAAATGT  C TTTAACTTGGCCTCATTT   ATTTA  CCCTTCAACTTT  GTGTGCACAAGTAGACACTT AA TTGTATAAAGTTGAACAAGTAGACATATG GTCCTATGT GCAT  TACA   TAG    
         ||||||||||||||||||  | ||||||||||||||||||   |||||  ||||||||||||  |||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| ||||  ||||   |||     
         CCGTATTATGTATTTATA  G AAATTGAATTGGAGTAAA   TAAAT  GGGAGGTTGAAA  TACACGTGTTCATCTGTGAA TT AACATATTTTAACTTGTTTATCTGTGTGT CAGGATGCA CGTA  ATGT   GTT    
TTTAAATAT                  CT T                  ATA     AC            CT                    C  A                             G         C    AG    ACA   AAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820577

ATAAATTTGGCATAATACATAAATGTCCCTTTTAACTTGGCCTCATTTCACATTTAGACCCTTCAACTTTTGTGTGCACAAGTAGACACTTAAACTTGTATAAAGTTGAACAAGTAGACATATGAGTCCTATGTAGCATAATACACATAGGACACAAATTGACATGTAGAATGCCACGTAGGACGTGTGTGTCTATTTGTTCAATTTTATACAAATTCAAGTGTCTACTTGTGCACATTCAAAGTTGGAGGGCATAAATATAAAATGAGGTTAAGTTAAATGTCATATTTATGTATTATGCCTATAAATTT

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