Plant MITE

SE3850579

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8897
Solanum tuberosum
SE3850579
PIF/harbinger
To11
chr07:25554785-25555010
TAA
AGAGGGCATTTGGATTGGCTTTTCT

Secondary structure and sequence

TSD TIR

5'

3'

TA     GCA             TT  -   -    GTTATAAGCTAGTAAAAGCTAAAAATCGTAAGTTGGGAATACCCAACTTTTAGCTTTTAGCTTATTTTTGTATTTTTT
  AGAGG   TTTGGATTGGCTT  CT AAA ATAA                                                                              
  |||||   |||||||||||||  || ||| ||||                                                                               
  TCTCC   AAACCTAACCGAA  GA TTC AGAA                                                                              
AA     GAC             TC  A   A    AACAGAAATTCTAGAAAAAGATGAAAAACACCACAAAGCTTTTCTTTTTACACAAAAAATCGTGAATGAAAATCCGGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3850579

TAAGAGGGCATTTGGATTGGCTTTTCTAAAATAAGTTATAAGCTAGTAAAAGCTAAAAATCGTAAGTTGGGAATACCCAACTTTTAGCTTTTAGCTTATTTTTGTATTTTTTTGGCCTAAAAGTAAGTGCTAAAAAACACATTTTTCTTTTCGAAACACCACAAAAAGTAGAAAAAGATCTTAAAGACAAAAGAACTTAAGCTAAGCCAATCCAAACAGCCTCTAA

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