SE3830581

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8899
  • Solanum tuberosum
  • SE3830581
  • hAT
  • Hat25
  • chr05:4379742-4379947
  • CCTATGGC
  • CTATGGCCAGTGGCGGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
C      C           -----------CCA     TTTATTTCATGAGTGCTCAATTATTTTTAGTTTGAGAATTGCTATATAAAGTGGGTGCTTAGTTAATACA
 CTATGG CAGTGGCGGAT              GAAAT                                                                      
 |||||| |||||||||||              |||||                                                                      T
 GGTATC GTCACCGCCTA              TACCC                                                                      
C      C           CATACAATACCTAA     ACGAATTCGTGGGTAACGAAAAAACGTTAATTGTGATTATAAACAAACATTATAGATTATTAAGTAAGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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