Plant MITE

SE3810586

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8904
Solanum tuberosum
SE3810586
Tc1/Mariner
St21
chr02:37513267-37513499
TA
TACTCCCTCCATCCCAATTTAAGTGTCTTA

Secondary structure and sequence

TSD TIR

5'

3'

          A                   CTTTCC     GGTCTGTCCCTAAAAAAGTGCCTCATATTATATTTAGTAAGTATTGCGATTCCAGCGTCCTACATTGCAAGTTTAAGA
TACTCCCTCC TCCCAATTTAAGTGTCTTA      TTTTT                                                                              
|||||||||| |||||||||||||||||||      |||||                                                                              C
ATGAGGGAGG AGGGTTAAATTCACAGAAT      CAAAC                                                                              
          C                   ------     TGATCCGTGTTTGTTTCCCTCTGAAAACTTAGAACACCGGAATTTAATTTCGAAACACATCAGGAAATTCAGTAACAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810586

TACTCCCTCCATCCCAATTTAAGTGTCTTACTTTCCTTTTTGGTCTGTCCCTAAAAAAGTGCCTCATATTATATTTAGTAAGTATTGCGATTCCAGCGTCCTACATTGCAAGTTTAAGACCACAATGACTTAAAGGACTACACAAAGCTTTAATTTAAGGCCACAAGATTCAAAAGTCTCCCTTTGTTTGTGCCTAGTCAAACTAAGACACTTAAATTGGGACGGAGGGAGTA

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