SE3820588

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8906
  • Solanum tuberosum
  • SE3820588
  • Mutator
  • M11
  • chr12:63008877-63009218
  • TAAAAATTA
  • TTAGGGAAAATGCATAAGTACCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAA                        CCCAC                   T                                                                       C     A -     A          AA C  ATA   TAGAAAAAATTGT    AC
      TTAGGGAAAATGCATAAGTACCCC     CCAACCTATGCCCGAAATC CAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCTCGAACTTATTTTATAAATAATTTTCTACCC TTTTC G CCTAC TGGCACTATC  C AG   GCT             CAAC  
      ||||||||||||||||||||||||     ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| ||||||||||  | ||   |||             ||||   
      AATCCCTTTTACGTATTCATGGGG     GGTTGGATACGGGCTTTAG GTCTCTGTGTGAATATGATATGATTCCAGGATAATGGGGGAGCTTGAATAAAATATTTATTAAAAGATGGG AAAAG C GGATG ACCGTGATAG  G TC   CGG             GTTG  
ATTAAA                        ----A                   T                                                                       -     C A     C          AA A  ---   -------------    CG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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