SE3810589

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8907
  • Solanum tuberosum
  • SE3810589
  • Tc1/Mariner
  • St5
  • chr04:62196606-62196871
  • TA
  • TACTCCCTCCGTTTCAATTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
                     ------------    TCTTACTTTCCTTTTTAGTCCGTTTCAAAAAGAATGTCTCTTTCCTTTATTGACATCTCTTTAATTCTAACTCTCCACACGACATGTTTAAGACAACAAGAT
TACTCCCTCCGTTTCAATTTG            GTTG                                                                                                      
|||||||||||||||||||||            ||||                                                                                                       
ATGAGGGAGGCAAAGTTAAAC            ACTG                                                                                                      
                     AAACTAACCAAA    AACCCTTTTGACAGTACCTCAAATGAAATTGTTTCATTTCTTCTGAAAACTTAGAACACCAGAATTTGATTTCTCTACATGTTACATGGTTTTACAAGGAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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