Plant MITE

SE3820590

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8908
Solanum tuberosum
SE3820590
Mutator
M8
chr12:3431916-3432240
TATTATTAT
CATAATACATAAACATGACTTTAACTTGGCGTTAGCTGACAACTATGACTTTTAACTTTGGATGTGCATAAGTAGACACTTAAACATGTATAAAATTGGACAAATAGACACATTCGTTCTACATGGCACCCTACATGA

Secondary structure and sequence

TSD TIR

5'

3'

TATTATTATGA             C    -            G    CT          A             A             A        CA                 A         TC   C         CCC       CAATTTT     CTA
           CATAATACATAAA ATGA CTTTAACTTGGC TTAG  GACAACTATG CTTTTAACTTTGG TGTGCATAAGTAG CACTTAAA  TGTATAAAATTGGACAA TAGACACAT  GTT TACATGGCA   TACATGA       GTGTC   
           ||||||||||||| |||| |||||||||||| ||||  |||||||||| ||||||||||||| ||||||||||||| ||||||||  ||||||||||||||||| |||||||||  ||| |||||||||   |||||||       |||||    
           GTATTATGTATTT TACT GGAATTGAACTG AGTT  CTGTTGATAC GGAGGTTGAAACT ACACGTGTTCATT GTGAATTT  ACATATTTTAATTTGTT ATCTGTGTG  CAG ATGTACTGT   ATGTGTT       TACGG   
TATTATTATCC             A    A            A    AC          G             C             C        AA                 C         TA   A         ATT       ----TCC     TAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820590

TATTATTATGACATAATACATAAACATGACTTTAACTTGGCGTTAGCTGACAACTATGACTTTTAACTTTGGATGTGCATAAGTAGACACTTAAACATGTATAAAATTGGACAAATAGACACATTCGTTCTACATGGCACCCTACATGACAATTTTGTGTCCTACATGGCATCCTTTGTGTATTATGTCATGTAAGACATGTGTGTCTACTTGTTTAATTTTATACAAATTTAAGTGCTTACTTGTGCACACTCAAAGTTGGAGGGCATAGTTGTCCATTGAAGTCAAGTTAAGGATCATATTTATGTATTATGCCTATTATTAT

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