SE3820594

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8912
  • Solanum tuberosum
  • SE3820594
  • Mutator
  • M6
  • chr01:424340-424648
  • TTCAATCTA
  • AGGGATAAGGGTCTAAAAAATATCCCAATTTTGATCGAATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCAATCT              A   A  A                    ACTA                              TACCT    A            CC          CA       T                -----AAAA     GC
        AGGGATAAGGGTCT AAA AT TCCCAATTTTGATCGAATTT    TTGCGATACTAAACTTTCATGAGGACCTAT     CCCT GACTATTTAATA  GTATTTTAAA  TATATAT TGCCCACGTGGACATA         ATAAT  
        |||||||||||||| ||| || ||||||||||||||||||||    ||||||||||||||||||||||||||||||     |||| ||||||||||||  ||||||||||  ||||||| ||||||||||||||||         |||||  A
        TCCCTATTTCCAGA TTT TA GGGGTTGAAACTAGCTTAAA    AACGCTATGATTTGAAAGTACTCCTGGATG     GGGA TTGATAAATTAT  CATAAAATTT  ATATATA ACGGGTGCACCTGTGT         TATTA  
  CTAACT              C   G  C                    CAAC                              -----    C            CA          CC       C                AATGATAAA     GA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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