Plant MITE

SE3830595

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8913
Solanum tuberosum
SE3830595
hAT
Hat8
chr07:20958455-20958843
TTCCTCAG
AGCAGTGTTATCAAA

Secondary structure and sequence

TSD TIR

5'

3'

TTCCTC               A    AAAG    A   AAA ---    -      G    GGCTTGAAGTGCAATGTGCAAATAAAGCGTGGGTTTTACTGAGAAGAGGAGCCAATGGAGAAAACATATATATATATATATGTTTAGTCCAAGACTAACAGTTATAAGCATGAATAACAAATATATGGACAAAGAAATTG
      AGCAGTGTTATCAAA TCAG    CGCA AAA   C   TCTA AGGTTC TTTG                                                                                                                                            
      ||||||||||||||| ||||    |||| |||   |   |||| |||||| ||||                                                                                                                                             
      TTGTCACAATAGTTT CGCG    TGAA TTC   G   CTTT CTCCGA GTTT                                                                                                                                            
GACTCC               C    ----    -   --- GGA    G      -    TGTACAAACTCGCGAAGGGGAGCGAATTACACGCGAAGTCACAGCAGTATTTCGAGATTCTGTATGAAAAGGAACACTTACTCGTAAAGGACTTCTCCGCTGCGATTTGGTAACTATAAAGTGAAATAGCATTTTTATTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3830595

TTCCTCAGCAGTGTTATCAAAATCAGAAAGCGCAAAAAAAACTCTAAGGTTCGTTTGGGCTTGAAGTGCAATGTGCAAATAAAGCGTGGGTTTTACTGAGAAGAGGAGCCAATGGAGAAAACATATATATATATATATGTTTAGTCCAAGACTAACAGTTATAAGCATGAATAACAAATATATGGACAAAGAAATTGATTATTTTTACGATAAAGTGAAATATCAATGGTTTAGCGTCGCCTCTTCAGGAAATGCTCATTCACAAGGAAAAGTATGTCTTAGAGCTTTATGACGACACTGAAGCGCACATTAAGCGAGGGGAAGCGCTCAAACATGTTTTGAGCCTCGTTTCAGGGCTTAAGTGCGCCTTTGATAACACTGTTCCTCAG

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