Plant MITE

SE3810596

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8914
Solanum tuberosum
SE3810596
Tc1/Mariner
St24
chr03:4543540-4543791
TA
TACTCCCTTC

Secondary structure and sequence

TSD TIR

5'

3'

          AGACC      --- -         CCATTAAGAATCCACAAACTACAACGTGTAGTTAATTCACTAAATTAACTATCTCTATTTAATAAATGTCTCTTGAAAATTGAACACCGTAAGTT
TACTCCCTTC     TAAGCA   A AAATCACGT                                                                                               
||||||||||     ||||||   | |||||||||                                                                                                
ATGAGGGAGG     AGGGTT   C CACAGTGGA                                                                                               
          ----C      TTA T         ATTGTTTTTTTTTTAATAGGGTTTTATTCACTGTGCGAATCCTTATGTTCTGTTTTTAATTATACAAAAAAGTTGTTATGGGAATATGAGGTAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810596

TACTCCCTTCAGACCTAAGCAAAAATCACGTCCATTAAGAATCCACAAACTACAACGTGTAGTTAATTCACTAAATTAACTATCTCTATTTAATAAATGTCTCTTGAAAATTGAACACCGTAAGTTAAATGGAGTATAAGGGTATTGTTGAAAAAACATATTAATTTTTGTCTTGTATTCCTAAGCGTGTCACTTATTTTGGGATAATTTTTTTTTTGTTAAGGTGACACTCATTTTGGGACGGAGGGAGTA

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