SE3820599

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8917
  • Solanum tuberosum
  • SE3820599
  • Mutator
  • M64
  • chr01:87287101-87287622
  • TTTATTTTT
  • GGAAAAACTAAGCAAATACCACACAAAATCAAAATAATTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTATTTTT          AGC    --A   CAC    -   A         AAAT     TTTTTTATATTCATATCCCACTAATTAATTACACTATATACACCCAACTAATTTCATTTAATTGATACTAAATCAGTATCATATATTGTATTAGTATTATTAAAACTGATAATTTCGCTTAATTTATATTATATCAGTATATGTATACTGTATTGATATTGTTAAGGTTTCTTGTTTAAAAATTATTCATTAGTCAATGAT
         GGAAAAACTA   AAAT   CCA   AAAA TCA AATAATTAT    ATATA                                                                                                                                                                                                         
         ||||||||||   ||||   |||   |||| ||| |||||||||    |||||                                                                                                                                                                                                         A
         CCTTTTTGAT   TTTA   GGT   TTTT AGT TTATTAATG    AGTAT                                                                                                                                                                                                         
TTTTTATTT          GTA    CCC   --A    G   A         AACA     AGCGTTAGATTTCATTAAGTACTTTATGTTTAAGAGATTTTTTTAATGTCGGGTATGAGTGGTAAGTAATTCCGACTATGAAAAGCGAATTGACTATGATTTAGTTATATACATATGACATAACTATAGTAATTCCAAAGAATAAGTCTTTAATGTGTAATCAATTACTATAATATTTTCATATATATATATGAGGATGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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