SE3830600

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8918
  • Solanum tuberosum
  • SE3830600
  • hAT
  • Hat64
  • chr02:41644255-41644427
  • ATTACCTG
  • CAGAGGAGGAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTACCTG      A     ---CA   TTAGGAGTTTGAGGGTTGTAAATCAATTTTGTTTGGGGGTTCGCATGTTAATGTACATAT
        CAGAGG GGAGC     CGA                                                            
        |||||| |||||     |||                                                             
        GTCTCC CCTCG     CCC                                                            
CTCCATTA      G     ATTCA   CAAGTACCTTGAGTGATCGAAAAAGCGTTTGGGATATAAACATAATTTTTGATTTATTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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