Plant MITE

SE3820602

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8920
Solanum tuberosum
SE3820602
Mutator
M8
chr01:73319612-73319936
TATTAATTT
ATTAATTTGGCATAACACATAAAAGTGCCCTTTAACTTGGCTTCATTTTACGTTTATGTCCTCCAACTTTGGATATGTACAAGTAGACACTTAAATTTGTATAAAGTTGAACAAGTAAACATATGAATCCTACATGGCATAATACACGTAGGACACCACGT

Secondary structure and sequence

TSD TIR

5'

3'

 T      TT  C    C       A                     TT       T     CTC         ATA                                          --A       AA             AA   -----------------    A  A
  ATTAAT  GG ATAA ACATAAA GTGCCCTTTAACTTGGCTTCA  TTACGTT ATGTC   CAACTTTGG   TGTACAAGTAGACACTTAAATTTGTATAAAGTTGAACAAGTA   ACATATG  TCCTACATGGCAT  TAC                 ACGT GG 
  ||||||  || |||| ||||||| |||||||||||||||||||||  ||||||| |||||   |||||||||   ||||||||||||||||||||||||||||||||||||||||||   |||||||  |||||||||||||  |||                 |||| || C
  TAATTA  CC TATT TGTATTT TACGGGAAATTGAACCGAAGT  AGTGTAA TACGG   GTTGAGACC   ACGTGTTCATCTGTGAATTTGAACATATTTTAACTTGTTTAT   TGTGTAC  AGGATGTACTGTA  ATG                 TGCA CC 
TT      -T  A    A       A                     TT       C     TAA         CAC                                          CTG       --             GG   TACAGTAAAAAACAGGA    -  A

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820602

TATTAATTTGGCATAACACATAAAAGTGCCCTTTAACTTGGCTTCATTTTACGTTTATGTCCTCCAACTTTGGATATGTACAAGTAGACACTTAAATTTGTATAAAGTTGAACAAGTAAACATATGAATCCTACATGGCATAATACACGTAGGACACCACGTAGGACAAAAAATGACATGTAGGATGTCATGTAGGACATGTGTGTCTATTTGTTCAATTTTATACAAGTTTAAGTGTCTACTTGTGCACACCCAGAGTTGAATGGCATCAATGTGATTTGAAGCCAAGTTAAAGGGCATATTTATGTATTATACCTATTAATTT

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