Plant MITE

SE3810603

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8921
Solanum tuberosum
SE3810603
Tc1/Mariner
St10
chr02:25494033-25494374
TA
TACTCCCTCCGTCTCATTTTATATGTCATCTCTTTCT

Secondary structure and sequence

TSD TIR

5'

3'

              C                C   -  ATAA   GT  GTCCATATATAATACTTGTCATTTCATAAAATCAATGCATAAATTAGCATATTGTTCCTTTTTTACCCTTGTGAGTTATTAGCATTGAAAAATACATTTGACCAACTTAGAAAAGTTAAGTAAA
TACTCCCTCCGTCT ATTTTATATGTCATCT TTT CT    ATA  TG                                                                                                                            
|||||||||||||| |||||||||||||||| ||| ||    |||  ||                                                                                                                             
ATGAGGGAGGCAGG TAAAATATACAGTGGA AAA GA    GTG  AA                                                                                                                            
              A                A   T  -AAC   --  CGTAATTCTTTACTACATTGAAATGGGAAGATGGGAATAAATTAAAAAACTTTGAGTTCAAAAGTTAGTTACTTATACTTAATTAAATAAAACTAATTAATTAAATTGGTTACTTGTACTTAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810603

TACTCCCTCCGTCTCATTTTATATGTCATCTCTTTCTATAAATAGTTGGTCCATATATAATACTTGTCATTTCATAAAATCAATGCATAAATTAGCATATTGTTCCTTTTTTACCCTTGTGAGTTATTAGCATTGAAAAATACATTTGACCAACTTAGAAAAGTTAAGTAAATGATTCATGTTCATTGGTTAAATTAATTAATCAAAATAAATTAATTCATATTCATTGATTGAAAACTTGAGTTTCAAAAAATTAAATAAGGGTAGAAGGGTAAAGTTACATCATTTCTTAATGCAAGTGCAAAGTAAAAAGGTGACATATAAAATAGGACGGAGGGAGTA

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