Plant MITE

SE3810606

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8924
Solanum tuberosum
SE3810606
Tc1/Mariner
St6
PGSC0003DMB000000457:205640-205903
TA
TACTCCATCTGTCCCAATTTATGTGACACATTTCGCTTTTCGAGAGTCAAACAGTTTAAGTTTGACCGAGAATTTGCTCGTGAAATCTT

Secondary structure and sequence

TSD TIR

5'

3'

      A                            CT        G       -     AG      C A      GC     AA     -------CA    TTTTAAAAATGAAATTCATATATTTGTAAACTAC
TACTCC TCTGTCCCAATTTATGTGACACATTTCG  TTTCGAGA TCAAACA GTTTA  TTTGAC G GAATTT  TCGTG  ATCTT         AATT                                  
|||||| ||||||||||||||||||||||||||||  |||||||| ||||||| |||||  |||||| | ||||||  |||||  |||||         ||||                                   
ATGAGG AGACAGGGTTAAATACACTGTGTAAAGC  AAAGCTCT AGTTTGT CAGAT  AAACTG C TTTAAA  AGTAT  TAGAA         AACT                                  
      G                            TT        A       T     AG      A A      -A     -A     AAATTATAA    TAATAGTTAATAACACTGAATATCATGAAAAATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810606

TACTCCATCTGTCCCAATTTATGTGACACATTTCGCTTTTCGAGAGTCAAACAGTTTAAGTTTGACCGAGAATTTGCTCGTGAAATCTTCAAATTTTTTAAAAATGAAATTCATATATTTGTAAACTACATAAAAAGTACTATAAGTCACAATAATTGATAATTCAAAATATTAAAAAGATATATGAAAAATTTACAGTCAAAGATAGACTTGTTTGAATCTCGAAATTCGAAATGTGTCACATAAATTGGGACAGAGGGAGTA

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