Plant MITE

SE3810613

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8931
Solanum tuberosum
SE3810613
Tc1/Mariner
St1
chr10:37658487-37658763
TA
TACTCCCTATGTCCTTAATTACTTGTCTACTTTT

Secondary structure and sequence

TSD TIR

5'

3'

        A                    C    GAATCGACA   CTA    GAAAACAATAATTGACATAGTGAGTTTACCATTTTACCCTATTAATTATGAAGTGAGTGAATTAAAAATTTAAGATTTTCAAGAAGT
TACTCCCT TGTCCTTAATTACTTGTCTA TTTT         CAC   TTAA                                                                                       
|||||||| |||||||||||||||||||| ||||         |||   ||||                                                                                        
ATGAGGGA ACAGGGATTAATGAACAGGT AAAA         AAC   AAGG                                                                                       
        G                    A    GAAAAAATC   ---    ATTAATGAACAGGTAAAACTGTTTAGTTCTTTCTTGTTTAATAAAAATGGATAATATGGGAGTTAATTAATGATACTTTTTCCATCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810613

TACTCCCTATGTCCTTAATTACTTGTCTACTTTTGAATCGACACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATTTTACCCTATTAATTATGAAGTGAGTGAATTAAAAATTTAAGATTTTCAAGAAGTTCTACCTTTTTCATAGTAATTAATTGAGGGTATAATAGGTAAAAATAATTTGTTCTTTCTTGATTTGTCAAAATGGACAAGTAATTAGGAACAACTAAAAAAGAAAAATGGACAAGTAATTAGGGACAGAGGGAGTA

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