SE3830617

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8935
  • Solanum tuberosum
  • SE3830617
  • hAT
  • Hat65
  • chr04:26240726-26241242
  • GTGGAAGG
  • GTGGAAGGCAGGGGCGGATCTACGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
              AA  C     C    CTA    CA             ATCCGAACCCCCTTCGTACGAAAAATTACACTATATATATAAGATTAAATTTTGAATATATGTGTATATATATACTATTGAACCCCCTGAACATACACCAAAGGCGTAGCTCAGTGGCGTTGGGGGTTCAGGAATTTGCTCTACTGCACGCGAGGTCGCGTGTTCGAATCCGGGCAGAGGCATTTTGTTTTATCAGCTTATTTCAGGCGTTTTT
          GTGG  GG AGGGG GGAT   CGTT  ACGAAGGGGGTTC                                                                                                                                                                                                                      
          ||||  || ||||| ||||   ||||  |||||||||||||                                                                                                                                                                                                                       
          CACC  CC TCCCT CCTA   GTAG  CCCCCAAGTTTTT                                                                                                                                                                                                                      
GGAAGGTGGT    -G  -     -    AAA    TT             TTTAATTATGTGCATTTATTATAGGTGTTTATTTGCCCAGCTTAGCTTATATTTGCCCAGCCTAATTTGTCAGCTTAGTTCTTCTTTGCCTAAAAATTTATAAACTGAAATATTAAACCCTTATTTGATATTTAGGATTTAAGGGTTAGTCGCAAAATTAAAAAACCTTGATTTGTAGTAAAAGACTAACGTAATAATAAATAAAAATTTTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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