Plant MITE

SE3810619

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8937
Solanum tuberosum
SE3810619
Tc1/Mariner
St2
chr10:16617614-16617954
TA
TACTCCCTCCGTCCCATTTTATATGATGTACTTT

Secondary structure and sequence

TSD TIR

5'

3'

         C      T          G      GATT       AA  TTAAGAAAAATGAAAAGACTCTACAATGTTCCGAAAATACCCTTATTAATAAGTCTAATTTGTTAAATAAAAAAAATACTATATCTGACTTTGAATAGAAAAGTTTATGACTTTTCCCTCTCTC
TACTCCCTC GTCCCA TTTATATGAT TACTTT    TGGCACA  CT                                                                                                                            
||||||||| |||||| |||||||||| ||||||    |||||||  ||                                                                                                                            A
ATGAGGGAG CAGGGT AAATATACTG GTGAAA    GGAAAAA  CC                                                                                                                            
         A      T          A      ----       --  AGTCAGGGTTTTTCTTACTGTGTAAAGGAATAAACCATTTATAAATTACTGTAATAGAGATAAAATGGTAAGAACTTAACCTGAGAAAACCTAAATATAATTACTGACTACACTGTAATTGAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810619

TACTCCCTCCGTCCCATTTTATATGATGTACTTTGATTTGGCACAAACTTTAAGAAAAATGAAAAGACTCTACAATGTTCCGAAAATACCCTTATTAATAAGTCTAATTTGTTAAATAAAAAAAATACTATATCTGACTTTGAATAGAAAAGTTTATGACTTTTCCCTCTCTCATAAGTTAATGTCACATCAGTCATTAATATAAATCCAAAAGAGTCCAATTCAAGAATGGTAAAATAGAGATAATGTCATTAAATATTTACCAAATAAGGAAATGTGTCATTCTTTTTGGGACTGACCAAAAAGGAAAGTGAGTCATATAAATTGGGACAGAGGGAGTA

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