Plant MITE

SE3820623

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8941
Solanum tuberosum
SE3820623
Mutator
M6
chr03:1476708-1477020
TAAATATAA
AGGGAAAAGGGTCTGAAAAATACTTCAACTTTGGCCGAAATTGTTGTTACGATACCAAACTTTATGGATGACCTTTTACCCCTGCATTATTTAATAGTGTATTTTAAAGGTATATATGTGCCCACGTGAACACATTACTATT

Secondary structure and sequence

TSD TIR

5'

3'

TAAATATA                                                              TA    --T              -GC                                   C C     A   -   TAC    TAAAA
        AGGGAAAAGGGTCTGAAAAATACTTCAACTTTGGCCGAAATTGTTGTTACGATACCAAACTT  TGGA   GACCTTTTACCCCT   ATTATTTAATAGTGTATTTTAAAGGTATATATGTG C ACGTG ACA CAT   TATT     
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||   ||||||||||||||   ||||||||||||||||||||||||||||||||||| | ||||| ||| |||   ||||     T
        TCCCTTTTCCCAGACTTTTTATGAGGTTGAAACTGGCTTTAACAACAATGCTATGGTTTGAA  ACCT   CTGGAAAATGGGGG   TGATAAATTATCACATAAAATTTCCATATATACAC G TGCAC TGT GTA   ATAA     
AATATAAA                                                              --    TTC              ACA                                   A A     C   A   TTT    CGTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820623

TAAATATAAGGGAAAAGGGTCTGAAAAATACTTCAACTTTGGCCGAAATTGTTGTTACGATACCAAACTTTATGGATGACCTTTTACCCCTGCATTATTTAATAGTGTATTTTAAAGGTATATATGTGCCCACGTGAACACATTACTATTTAAAATGATGCAATATTTATGATGTCCACGTAGACACATATATACCTTTAAAATACACTATTAAATAGTACAGGGGGTAAAAGGTCCTTTCCAAAGTTTGGTATCGTAACAACAATTTCGGTCAAAGTTGGAGTATTTTTCAGACCCTTTTCCCTAAATATAA

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