SE3820624

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8942
  • Solanum tuberosum
  • SE3820624
  • Mutator
  • M2
  • chr07:37606404-37606761
  • TAAAATATA
  • TAGGGCAAATTACATAAATCACATACTTTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAATA     C      CAT     A    C     -AGGTAAA     AAT          -AAAAA      -TTACA         -------CA   --    ACAATAATATAAGTCCTGATACATTAATCTAATGTGCGAGATACATTAATCGTTAAGTAAGATACATTACATTTTAT
       TAGGG AAATTA   AAATC CATA TTTTA        ATTAT   TTATTCCTTA      TTATAA      GAAATTCCT         AAC  AGAT                                                                             
       ||||| ||||||   ||||| |||| |||||        |||||   ||||||||||      ||||||      |||||||||         |||  ||||                                                                              
       ATCCT TTTAAT   TTTAG GTGT AAAAT        TAATG   AATAGGGGAT      AATGTT      TTTTAGGGA         CGT  TCTA                                                                             
ATATAAA     T      CTC     A    -     CAAATGAA     -GT          ATTCAA      TAAAGG         ATAAAAGTG   AG    ATCACATAGAACACGTTGTCTAATTACATAGTCGCGAATATAATAACATAGAGCGCGTAGTCTAATCACATAGTACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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