SE3850626

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8944
  • Solanum tuberosum
  • SE3850626
  • PIF/harbinger
  • To5
  • chr01:89874761-89875216
  • TTA
  • TAGGGGTCGTTTGGTAGAGTGTATTAGGAAAAATATTGCATGTATTA

Secondary structure and sequence

TSD    TIR
5'



3'
T                        T     -------     TT CA       ACCTTGT           ACCTTGTTTGGTACTCTTTTTCAACTTATGTATAACTAATGTTTGCATTAGTTATACACTCTATTGTGTATTAAGGTCTGCATTGCTAATACCATGGATTTTTAGGTATTAGCAATGCAATGATTTTAATGCATGCATTAACATGATAAAAGACTCAACTGCT
 TAGGGGTCGTTTGGTAGAGTGTAT AGGAA       AAATA  G  TGTATTA       GTATTACTAGT                                                                                                                                                                   
 |||||||||||||||||||||||| |||||       |||||  |  |||||||       |||||||||||                                                                                                                                                                   C
 ATCCCCAGCAAACCATCTCACATA TTCTT       TTTAT  C  ACATAAT       CATAATGAACG                                                                                                                                                                   
A                        -     ATTACAA     TT --       -------           TAATCGTTACATACATAATCAATACGAACGTAATTAATATGTATCTAATAAAATTACGTAACAAACCAAACTACGTAATTTTTATCATACATAACGTAATTTTTATAATAAATGTTTCTATGGGAGGTGAAAATACACCTTTTCTACATTTTTTTGAAAACTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End