SE3820627

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8945
  • Solanum tuberosum
  • SE3820627
  • Mutator
  • M8
  • chr08:2301637-2301948
  • TAAATATTA
  • AATATTAGGCATAATAAATAAACATGACCCTTAACTT

Secondary structure and sequence

TSD    TIR
5'



3'
TA      -          A                    AGCG    TT         TA                    C                                  A         TCA     CA     CCCG    ------    AT
  AATATT AGGCATAATA ATAAACATGACCCTTAACTT    TCAG  GGCAACTAT  CCTTTAACTTTGGGTGTGCA AGGTAGGCACTTAAACTTGTATAAAATTGAACAA TAGACACAT   TCCTA  TGGCA    ACAT      TGCA  
  |||||| |||||||||| ||||||||||||||||||||    ||||  |||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||   |||||  |||||    ||||      ||||   
  TTATAA TCCGTATTAT TATTTGTACTGGGAATTGAA    AGTT  CTGTTGATA  GGAGGTTGAAACTCACATGT TTCATCTGTGAATTTGAACATATTTTAACTTGTT ATTTGTGTG   AGGAT  ACCGT    TGTG      GTGT  
 A      A          G                    CTTA    GC         CG                    T                                  C         CAC     --     ATTA    CATCCT    TT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End