SE3820630

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8948
  • Solanum tuberosum
  • SE3820630
  • Mutator
  • M65
  • chr04:13364940-13365221
  • AAAAAATAA
  • GGGAGAAGTATTGAAAACATTCTAAACTTGGCATGAATTGTTAGTTTCGTCTTCAAACTATTGATAGGCTTAGAAACACTTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAAAATAA                    T  -    T                          A            G               CTAT  A      T    -A   A   AAGAAAATCAAATT  -     TA
         GGGAGAAGTATTGAAAACAT CT AAAC TGGCATGAATTGTTAGTTTCGTCTTC AACTATTGATAG CTTAGAAACACTTCT    TT ACTAAT GAAT  AAA GCA              TA GGGTG  
         |||||||||||||||||||| || |||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||    || |||||| ||||  ||| |||              || |||||  A
         CTCTTTTCATAATTTTTGTG GA TTTG ACCGTGCTTAATAATCAAAGCAGAGG TTGATAACTATC GAATTTTTGTGAGGA    AA TGATTA CTTG  TTT TGT              GT CCCAC  
AATAAAAAA                    T  A    T                          C            A               ----  C      C    AA   A   AGGACTAAAACGGT  A     TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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