SE3820633

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8951
  • Solanum tuberosum
  • SE3820633
  • Mutator
  • M6
  • chr03:46561051-46561363
  • TTTTTTAAA
  • AAAGGGAAAAAGGTCTGAAATATATCTAAACTTTGACCGAAATTGTTGTAACAATACCGAACATTGGAAAGGACCTTTTACCCCCTGCACTATTTGATAGTGTATTTTAAAGGTATATATGTGCCCACGTGGACAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTTT          A   C     T    CTA       A             A  A         --AT    AA                -                               TA                 CATA      GCATA
      AAAGGGAAAA GGT TGAAA ATAT   AACTTTG CCGAAATTGTTGT AC ATACCGAAC    TGGA  GGACCTTTTACCCCCT GCACTATTTGATAGTGTATTTTAAAGGTATA  TGTGCCCACGTGGACAT    AATATT     
      |||||||||| ||| ||||| ||||   ||||||| ||||||||||||| || |||||||||    ||||  |||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||    ||||||     A
      TTTCCCTTTT TCA ACTTT TATG   TTGAAAC GGCTTTAACGACA TG TATGGTTTG    ACCT  CCTGGAAAATGGGGGA CGTGATAAATTATCACATAAAATTTCCATAT  ACACGGGTGCACCTGTG    TTATAA     
AAATTT          C   A     T    AGG       C             A  C         AAAT    --                A                               --                 -CAA      ATATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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