SE3810634

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8952
  • Solanum tuberosum
  • SE3810634
  • Tc1/Mariner
  • St9
  • chr10:48527989-48528255
  • TA
  • TACTCCCTCCGTCCCATATTAGTTGATCATCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
     CC                      T   ATTAAAAATA   G - CCATA   -----  TGATCACCTTACTAAATCAAGAAAACATTAATTAATTTTTTCCTATATTACCCTTGCAATTAATTCTCTTTGAAAGTGT
TACTC  TCCGTCCCATATTAGTTGATCA CTT          GTT T C     TTA     GT                                                                               
|||||  |||||||||||||||||||||| |||          ||| | |     |||     ||                                                                               T
ATGAG  AGGCAGGGTATAATCAACTAGT GAA          AGA A A     ATG     AT                                                                               
     AA                      -   ---------A   - A -----   TGCGT  AATTCTTTATTATTTATTCTTCTATTAAAATAATTAAGTGGGGAAATTTTTGAAGATCCTTTAAAATATTTGTTTACAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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