SE3820635

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8953
  • Solanum tuberosum
  • SE3820635
  • Mutator
  • M2
  • chr03:21544923-21545260
  • TTAATTTAT
  • TAATTTATGGAAAAATTACAGAAATCCCACCTTTTAG

Secondary structure and sequence

TSD    TIR
5'



3'
T   T   T  AA        G     C  -C       TTTACTT     -CA       C  T      TACA   CT CA          TTTTC    ATC    TAGTGTATCTCGCACATCAGATTAGTGTATCTCGCGCATCAGATTAGTGTATCATGTATAAAATG
 TAA TTA GG  AAATTACA AAATC CA  CTTTTAG       ATTAC   TTATCCC TA AAGTTT    AAT  C  AAATCCCTCA     GTGC   AGAT                                                                 
 ||| ||| ||  |||||||| ||||| ||  |||||||       |||||   ||||||| || ||||||    |||  |  ||||||||||     ||||   ||||                                                                 T
 ATT AAT CC  TTTAATGT TTTAG GT  GAAAATT       TAATG   AATAGGG AT TTCAAA    TTA  G  TTTAGGGAGT     TTGC   ATGT                                                                 
T   T   T  CG        A     T  AT       -CCATTT     TTA       A  T      --TA   AT TC          -----    -CT    TATTATATTCGCGACTATGTAATTAGACTACGCGCTCTATGTAATTAGCAATTCATTCTATGTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End