Plant MITE

SE3820636

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8954
Solanum tuberosum
SE3820636
Mutator
M11
chr01:66954929-66955247
TTATCAATT
GGGATGAGGTACAAGTACCTCCCTAGACTATGATCGAAATCCCAGAGACACACTTTAACTAAACTAAGGTCCTATTAT

Secondary structure and sequence

TSD TIR

5'

3'

TTATCAATT             A        C           C      C                                    CCCA     C          T        A          ----    TT    GATA  AAAATAT    -    C CCT
         GGGATGAGGTACA GTACCTCC TAGACTATGAT GAAATC CAGAGACACACTTTAACTAAACTAAGGTCCTATTAT    TGAAC CATTTTTTTT GTAATTTT TATACCTTTT    TGGC  ACAT    TC       CTCC CGCA G   
         ||||||||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    ||||| |||||||||| |||||||| ||||||||||    ||||  ||||    ||       |||| |||| |    
         CCTTATTCTGTGT CATGGAGG ATCTGATACTG CTTTAG GTCTTTGTGTGGAATTGATTTGATTCCAGGATAATG    ACTTG GTAAAAAAAA CATTAAAA ATATGGAAAA    ACCG  TGTG    AG       GAGG GCGT C   
TTAACTATT             A        -           A      A                                    -ACG     A          -        C          CCAA    --    ----  --GCACT    T    - AAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820636

TTATCAATTGGGATGAGGTACAAGTACCTCCCTAGACTATGATCGAAATCCCAGAGACACACTTTAACTAAACTAAGGTCCTATTATCCCATGAACCCATTTTTTTTTGTAATTTTATATACCTTTTTGGCTTACATGATATCAAAATATCTCCCGCACGCCTCAACTGCGTGGAGTCACGGAGTGTGCCAAACCAAAAGGTATACAAAATTACAAAAAAAATGAGTTCAGCAGTAATAGGACCTTAGTTTAGTTAAGGTGTGTTTCTGAGATTTCAGTCATAGTCTAGGAGGTACATGTGTCTTATTCCTTATCAATT

Copy Cancel