SE3820637

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8955
  • Solanum tuberosum
  • SE3820637
  • Mutator
  • M19
  • chr07:4826392-4826828
  • TTTTCAATA
  • AGGGAAAATGCTCAAATATGTCATCGAAGTTTGAGAAAAGGCTCATCTATGT

Secondary structure and sequence

TSD    TIR
5'



3'
TTTTCAAT                            G   G                 G CACCC  AAA   A    C    C            C   A      GA          T          AAAC     ATACTTTTGGGTTTTGCAAACCATTTTTTACACGTGAACAATTATGACTTGGCCACATCATTAATTGAATTATTTTTTAAAGGG
        AGGGAAAATGCTCAAATATGTCATCGAA TTT AGAAAAGGCTCATCTAT T     AT   AAG TTGG TCAT TATGCCATTTTC TTT AGAAAA  CTCATTCATG CATTATTTGT    TAAAA                                                                                    
        |||||||||||||||||||||||||||| ||| ||||||||||||||||| |     ||   ||| |||| |||| |||||||||||| ||| ||||||  |||||||||| ||||||||||    |||||                                                                                     
        TCCCTTTTACGAGTTTATACAGTAGCTT AAA TCTTTTTTGAGTAGATA A     TA   TTC AACC AGTG ATACGGTAAAAG AAA TCTTTT  GAGTAGGTAC GTAATAAACA    ATTAA                                                                                    
ATAACTTT                            G   A                 G -----  ATA   A    A    A            C   C      GC          T          ----     CTTTACTGTATCTATTCGGTTAATAAAAATACCTTCCATATCTACTCGGGAATGAGTTTTAAATTACCGTATAAAAACGGAAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End