SE3810638

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8956
  • Solanum tuberosum
  • SE3810638
  • Tc1/Mariner
  • St18
  • chr11:7964629-7964917
  • TA
  • TACTCCCTCCATTTCAAATTAATTGAATTGTTGAGGTGTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                                          -----ATAC      AAGAAAAGAAGATTAAGACATAAATTAGGCATAACTTTTCATTTTTACCCTTATTAATTATTATCAAATTTATGATTAAAACAATTAAAC
TACTCCCTCCATTTCAAATTAATTGAATTGTTGAGGTGTTTT         TCTTTT                                                                                          
||||||||||||||||||||||||||||||||||||||||||         ||||||                                                                                           
ATGAGGGAGGTAAAGTTTAATTAACTTAACAACTCTGTAAAA         TTTAAT                                                                                          
                                          AGTAAAAAG      TGAATTAACAAGTTAAAAGTTCTGATGAAAATCTTACAAGAAGGTTAAAATGGGAAGTAATCAATCATAATCTTAATCAATAATTAATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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